Package index • sparrow.shiny

All functions
`GeneSetDb.ReactiveGeneSetDb()`	Returns the filtered unreactive GeneSetDb from the reactiveGeneSetDb module.
`SparrowResultContainer()`	A wrapper for a SparrowResult that promotes internals of object.
`constructGseaResultTable()`	Builds the table of GSEA statistics to present to the user.
`exampleUISetup()`	Generates the CSS/UI setup to reduce code required in documentation examples
`explore()`	Interactively explore a SparrowResult via a shiny app
`.empty_link_function()` `ncbi.entrez.link()` `genecards.entrez.link()`	Transform a column in feature table to web link for that feature.
`geneSetContrastView()` `geneSetContrastViewUI()` `updateActiveGeneSetInContrastView()`	A module to encapsulate browsing differential statistics of a geneset.
`geneSetSelect()` `geneSetSelectUI()` `updateGeneSetSelect()` `gs.render.select.ui()` `gs.select.choices()`	Create a selectize input to select a gene set from a sparrow result.
`initialized()`	Tests if a module is initialized
`mgGeneSetSummaryByGene()` `mgGeneSetSummaryByGeneUI()`	A module to show a tabular view of genesets that contain genes of interest.
`mgResultFilter()` `mgResultFilterUI()`	A module that allows users to select which GSEA results to display.
`mgTableBrowser()` `mgTableBrowserUI()`	Displays a an interactive table of GSEA statistics from an analysis.
`mgVolcano()` `mgVolcanoUI()`	A module to visualize a volcano plot.
`reactiveGeneSetDb()` `reactiveGeneSetDbUI()`	A UI for a GeneSetDb that enables users to select gene sets used for testing.
`reactiveGeneSetSelect()` `reactiveGeneSetSelectUI()`	A gene set selector that enables users to pre-filter universe to choose from
`renderFeatureStatsDataTable()`	Create a DT::datatable of feature level statistics for use in shiny bits
`renderGseaResultTableDataTable()`	Creates a DT::datatable of geneset level GSEA results for use in shiny bits.
`round(<dt>)`	Rounds every numeric column of a data.table to given precision
`roundDT()`	Rounds all of the numeric columns of a DT
`summaryHTMLTable.sparrow()`	Creates an HTML-ized version of `tabuleResults`
`unselected()`	Checks if the return value from a selectInput looks like it's unselected
`userDefinedGeneSetDb()` `userDefinedGeneSetDbUI()`	Creates a GeneSetDb from a user-specfied gene set definition table.

Reference

All functions