Check to see if the GeneSetDb has a collection,name GeneSet defined

Check to see if the GeneSetDb has a collection,name GeneSet defined

hasGeneSet(x, collection, name, as.error = FALSE)

Arguments

x

GeneSetDb

collection

character indicating the collection

name

character indicating the name of the geneset

as.error

If TRUE, a test for the existance of the geneset will throw an error if the geneset does not exist

Value

logical indicating whether or not the geneset is defined.

Examples

gdb <- exampleGeneSetDb()
hasGeneSet(gdb, c('c2', 'c7'), c('BIOCARTA_AGPCR_PATHWAY', 'something'))
#> [1]  TRUE FALSE