Retrieve annotations from reactome.db

Retrieve annotations from reactome.db

getReactomeGeneSetDb(
  species = "human",
  id.type = c("entrez", "ensembl"),
  rm.species.prefix = TRUE
)

Arguments

species	the species to get pathay information for
id.type	"entrez" or "ensembl"
rm.species.prefix	pathways are provided with species prefixes from reactome.db, when TRUE (default), these are stripped from the gene set names.

Value

a reactome GeneSetDb object