Fetch the active (or all) gene sets from a GeneSetDb or MultiGSEAResult

geneSets(x, ...)

# S4 method for GeneSetDb
geneSets(x, active.only = is.conformed(x), ..., as.dt = FALSE)

Arguments

x	Object to retrieve the gene set from, either a `GeneSetDb` or a `MultiGSEAResult`.
active.only	only look for gene sets that are "active"? Defaults to `TRUE` if `x` is conformed to a target expression object, else `FALSE`. `conform()` for further details.
as.dt	If `FALSE` (default), the data.frame like thing that this funciton returns will be set to a data.frame. Set this to `TRUE` to keep this object as a `data.table`

a data.table with geneset information.

gdb <- exampleGeneSetDb()
gs <- geneSets(gdb)